SNP Profiles of PA 121 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
1._GC-05-011-1-11	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
2._RUQ_1059	_	_	GG	_	_	_	TT	_	CC	_	GG	_	AG	_
3._RUQ_1059	_	GG	GG	CT	_	_	TT	_	_	_	_	CC	AG	_
4._GC-05-011-1-11	CT	AG	CG	CT	CT	CT	TT	CC	CT	AT	AG	CC	AG	TT
5._PA_121_[PER]	CT	AG	CG	CT	CT	CT	TT	CC	CT	AT	AG	CC	AG	TT
6._GC-05-011-1-11	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
7._PA_121_[PER]	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
8._GC-05-011-1-11	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
9._GC-05-011-1-11	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
10._PA_121_[PER]	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
11._PA_121_[PER]	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
12._RUQ_1059	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
13._PA_121_[PER]	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
14._PA_121_[PER]	CT	GG	GG	CT	TT	TT	TT	CC	CC	AA	GG	CC	AG	TT
15._PA_121_[PER]	CT	GG	GG	CT	TT	TT	TT	CC	_	AA	GG	CC	AG	TT
16._RUQ_1059	_	_	CC	_	_	_	_	_	_	_	_	CC	_	TT
17._RUQ_1059	AG	GG	CC	AG	AA	AA	AA	_	_	AA	GG	GG	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
1._GC-05-011-1-11	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
2._RUQ_1059	_	_	_	_	GG	GG	AA	_	CC	CG	_	_	AA	_
3._RUQ_1059	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CT	AA	AG
4._GC-05-011-1-11	AA	GG	CT	CC	GG	GG	AA	TT	CC	CC	GT	TT	CC	AG
5._PA_121_[PER]	AA	GG	CT	CC	GG	GG	AA	TT	CC	CC	GT	TT	CC	AG
6._GC-05-011-1-11	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
7._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
8._GC-05-011-1-11	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
9._GC-05-011-1-11	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
10._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
11._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
12._RUQ_1059	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
13._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
14._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
15._PA_121_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA	AG
16._RUQ_1059	_	_	_	CC	CC	_	_	_	CC	CG	_	_	_	_
17._RUQ_1059	AA	CG	AA	GG	CC	CC	_	AA	CC	CG	CC	_	AA	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
1._GC-05-011-1-11	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
2._RUQ_1059	_	_	_	AA	_	_	_	_	AC	_	_	X_X	X_X	X_X
3._RUQ_1059	_	AA	CC	AA	CC	AA	CC	GT	AC	_	_	X_X	X_X	X_X
4._GC-05-011-1-11	AG	AA	CC	AA	CC	AA	TT	TT	CC	TT	CG	X_X	X_X	X_X
5._PA_121_[PER]	AG	AA	CC	AA	CC	AA	TT	TT	CC	TT	CG	X_X	X_X	X_X
6._GC-05-011-1-11	GG	AA	CC	AA	CC	AA	_	GT	AC	AT	GG	X_X	X_X	X_X
7._PA_121_[PER]	GG	AA	CC	AA	CC	AA	_	GT	AC	AT	GG	X_X	X_X	X_X
8._GC-05-011-1-11	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
9._GC-05-011-1-11	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
10._PA_121_[PER]	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
11._PA_121_[PER]	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
12._RUQ_1059	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
13._PA_121_[PER]	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
14._PA_121_[PER]	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
15._PA_121_[PER]	GG	AA	CC	AA	_	AA	CC	GT	AC	AT	GG	X_X	X_X	X_X
16._RUQ_1059	_	AA	_	AA	GG	AA	CC	_	AC	_	_	X_X	X_X	X_X
17._RUQ_1059	GG	AA	GG	AA	GG	AA	GG	AC	AC	AT	GG	X_X	X_X	X_X

Input profile: PA_121_[PER]

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Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

2._PA_121_[PER] RUQ_1059

69.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

3._PA_121_[PER] RUQ_1059

66.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PA_121_[PER] GC-05-011-1-11

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

5._PA_121_[PER]

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._PA_121_[PER] GC-05-011-1-11

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

7._PA_121_[PER]

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

8._PA_121_[PER] GC-05-011-1-11

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._PA_121_[PER] GC-05-011-1-11

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._PA_121_[PER]

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

11._PA_121_[PER]

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

12._PA_121_[PER] RUQ_1059

62.8 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._PA_121_[PER]

62.8 %
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

14._PA_121_[PER]

62.8 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

15._PA_121_[PER]

60.8 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

16._PA_121_[PER] RUQ_1059

50 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

17._PA_121_[PER] RUQ_1059

30.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25